Cody C. Baker, Ph.D.

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expertise in

Data scientist and software engineer with 12 years of experience in computational research and open-source infrastructure for neuroscience. Curated 256 TB of datasets on NIH archives, built 12+ data pipelines for research labs, and currently maintain petabyte-scale cloud archives at Dartmouth. Trained researchers from dozens of universities through conference workshops and hackathons. Deep toolkit in Python, AWS, DevOps, and cloud-optimized data formats (HDF5, Zarr), with a Ph.D. foundation in time series analysis, nonlinear dynamics, and machine learning.

Education


Technical Skills

Coding (in order of experience)
PythonMATLABTypeScriptJavaScriptHTMLLaTeXRCC++JavaCSS
Mathematical / Statistical / Machine Learning Techniques
multivariate regressionclassificationcross-validationclusteringmixture modelsdimensionality reductionensemble methodsdeep learningreinforcement learningtime series analysisanomaly detectioncomputer visionpose estimationspike sortingROI segmentation
DevOps
GitGitHub ActionsDockerSingularityunit & integration testinguser & quality testingStorybookChromaticPuppeteerCodecov
Libraries and Tools
NumPySciPypandaspolarssklearnOpenCVFFmpegtimeitairspeed velocityMatplotlibPlotlyPydanticBoto3concurrentsjoblibtqdmrequestspytestFlaskPyInstaller
Frameworks
Cloud & servicesAWS (IAM, S3, EC2, Batch, ECR, Route 53)TerraformIPInfoOpenCage
StreamingfsspecHDF5 ROS3remfileh5wasmobstore
DatabasesREDISDynamoDBMongoDBPostgreSQLSQLiteNoSQL
UIElectronTkQtReact
Lintingpre-commitRuffBlackflake8pydocstyleMypyPrettier
Parallelizationmultiprocessingthreadinghigh-performance computing (HPC)
Packaging & distributionSetuptoolsHatchTwineconda-forgeViteNode.jsYarn
Strong Familiarity with Data Formats
HDF5ZarrJSONYAMLXMLMarkdownRSTMP4AVITIFFParquetTSVXLSXSVGPNGJPEGMP3WAVPKLMAT
Administration
GitHubAWSPyPIconda-forgeDockerHubReadTheDocs
Business & Team Skills
AgileScrumresearchmentoringtrainingclient consultationsdrafting scopes of workbudgetinggrant writing

Experience







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